IMG 4 version of the integrated microbial genomes comparative analysis system

Details

Instance of

scholarly article

Publication date

27 October 2013

Author

Natalia N. Ivanova, Nikos C. Kyrpides, Tanja Woyke, Neha Varghese, Konstantinos Billis, Amrita Pati, Marcel Huntemann, Iain J. Anderson, Konstantinos Mavromatis, Krishna Palaniappan, Victor Markowitz, Ernest Szeto

Main subject

RNA sequencing

author name string

I-Min A Chen, Ken Chu, Anna Ratner

cites work

Insights into the phylogeny and coding potential of microbial dark matter, GenBank, Rfam 11.0: 10 years of RNA families, Fast gapped-read alignment with Bowtie 2, IMG: the Integrated Microbial Genomes database and comparative analysis system, The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata, The Pfam protein families database, NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy, The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases, KEGG for integration and interpretation of large-scale molecular data sets, Search and clustering orders of magnitude faster than BLAST, Prodigal: prokaryotic gene recognition and translation initiation site identification

copyright license

Creative Commons Attribution-NonCommercial 3.0 Unported

copyright status

copyrighted

issue

Database issue

language of work or name

English

page(s)

D560-7

published in

Nucleic Acids Research

title

IMG 4 version of the integrated microbial genomes comparative analysis system

volume

42